NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209887_1011350

Scaffold Ga0209887_1011350


Overview

Basic Information
Taxon OID3300027561 Open in IMG/M
Scaffold IDGa0209887_1011350 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2308
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057503Metagenome / Metatranscriptome136Y
F058527Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209887_10113502F058527N/AMKEREGANHHTNQQERAEPQEKHRYRVDHYGKSRNFVAYEGQTIIAVTLYRKGAAEIMARLEEKDRRIAALESQLATMSESQVFPVPSSAEPVPAPTWTPPRQLALIAAEDMPTYRITSPRRRHARPTRRP
Ga0209887_10113503F057503AGGAMLIRGSYRQVEAREKRRPAYGIIPVMQGRIDIVEDDFWTERLPFFPARFPTYSAKPEKVCGRFHTSDERYFDGSREIIPLTERRGQRTYVMMHPYVLEPKLTFTVGLYTKPKQYADQESPLGEVISSNNEGLREVQVGNAQAWYYPADKTLVLWECFFDDRFRKLPLPEDTNMQHLWRAFEHYLLKQFPQATTLATPFNDPIAESIDEYQAFLKTLGYSPLAQGAFGKKVR
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