NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209735_1001350

Scaffold Ga0209735_1001350


Overview

Basic Information
Taxon OID3300027562 Open in IMG/M
Scaffold IDGa0209735_1001350 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4243
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003175Metagenome / Metatranscriptome503N
F008922Metagenome / Metatranscriptome326Y
F014565Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0209735_10013503F003175GGAGGMNRIELSGKSQGKGRNGYFQLHSVELMNIPTDLDGQVLHIDFYPRRRVNFVGPARLLLSVEDATKLAQFFGEAVESRSPAANIEHGELVCECGHRGTPRLEESGYQVSHALVEIVGDTIIASGWDGSSRAVSEEGDAYWLMCNGCGKLHPLPPELHIDWR
Ga0209735_10013504F008922AGGTGGMTTKQRLACGAAILRSIDARRQRTGNRNELLALEQAIVDRELIELVTGGLCDEKRELAGDRVRKRHVPAATRDTGAAL
Ga0209735_10013507F014565AGGAGMKKAVNSGLILLSIGVLLLSGCGLRQCLHTTMGCEPDRNEREKPCQEFGGPTTGCHFN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.