NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209552_1033650

Scaffold Ga0209552_1033650


Overview

Basic Information
Taxon OID3300027563 Open in IMG/M
Scaffold IDGa0209552_1033650 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1500
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015463Metagenome / Metatranscriptome254Y
F068762Metagenome / Metatranscriptome124N
F082074Metagenome113Y
F093166Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209552_10336501F082074N/AMKAYIMLIMLLQLDPMDGLPYTTVLQQYPLVEYTTLQECEQAAELKRTEMLKSSRQFLDLVIVNIVIECVDSSLADFNSTDIVI
Ga0209552_10336502F015463GGAMQFNTWLKWSACVVTLAGAVLTSLRIDPMNIYLLNLGAVLYFVWGYRIREWNLIVINAGFILIYAWGIYLS
Ga0209552_10336503F068762N/AMLRQQDLYHLYAGIRERLHEIMIERHADPLQGEIRRAMAEELLEYLHSSEEGLKTMTDYKQQWTRGEDAV
Ga0209552_10336504F093166AGGMRIKTKGKMTQHEILASTIWDLKRDYTQMDEKDVAYDLGYIMGLCNSLGRTELGDMVLNKFEQYAF
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