NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209219_1000428

Scaffold Ga0209219_1000428


Overview

Basic Information
Taxon OID3300027565 Open in IMG/M
Scaffold IDGa0209219_1000428 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6320
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0209219_100042810F014888AGGAGMNKVLEILLTVVALAGLYSAIPTSTSRPGHSAIRAEQTVVVADGSDPMPLCRGKVCN
Ga0209219_10004287F005268GAGGVSRSDEETEEQQVWRVLSEAGLVEIPVDEFAEKIRDVKRIVMVRLCELLDFNTDFQERQSAAYSLGALKRLEVEVLANAAKPPEPSEL
Ga0209219_10004288F003832N/AMQSTAKQLRNQTNWPPDEGEVVSFQSSSGPETAILKEVRWGLVWRDFILEDGRVIPEHRISGCPQPQVWRKMNEVTDDEREECEGRLLSMAGAGLDPHQRDQSFWAELNQYLAYTYLRFKQAGGKVQDTER
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