NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208043_1033990

Scaffold Ga0208043_1033990


Overview

Basic Information
Taxon OID3300027570 Open in IMG/M
Scaffold IDGa0208043_1033990 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1558
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F006278Metagenome / Metatranscriptome377Y
F010114Metagenome / Metatranscriptome308Y
F036885Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0208043_10339901F006278N/AKLVADWAEQARRLVTKDVLPEGLIVDLTEVSYVDSVGEQFLKWLAGVGAVFIAGSVYAFVLCDRLRLPPMQEITERRKRRHGSSGEKSSIKYSHPVEAI
Ga0208043_10339902F001596AGGAGMSWFHSSTTPVDARNHASPAEVVACFQDQRNLLGRLAFLITGDHATAEQTLVQACETTLQGNRPFRDWLFEWAKAATIASAISHGAKAIRICEATYTEQRCLHVEHLSQGDAEERAAGLDLILGTDAQTLIAELDSLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHALTWLQKRQEKPVEENHILARI
Ga0208043_10339903F010114GAGGMIIELNNDETRLLHTVLLEQAQEHLSYADTSEVAERLYKLATRFERRVREVPNVTTA
Ga0208043_10339904F036885GGGGGMNDRKDRERVIAEITLSHLMRLGNEQGCPVSREQALAFLNRQGRAFEMWKHMMQAAEEFIAGSLLQHSFSSGGHEGLASRPRAVRSVSDAAR
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