NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208043_1050817

Scaffold Ga0208043_1050817


Overview

Basic Information
Taxon OID3300027570 Open in IMG/M
Scaffold IDGa0208043_1050817 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1214
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059707Metagenome / Metatranscriptome133Y
F100369Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208043_10508171F059707N/AIMLLHDIAARVGTASDEHEYGENKAVWLEDGNKVLNYMEADERFNAASFKDSMEEQGVVINQNDLATLIDNMRSLVKQWRSSLGEHGELVFYIDAC
Ga0208043_10508172F100369GGAGVPTDDTIRKRDQKRLREWFLTLGSPVQSREIRVVLQYLQALDVCDLLTQSAERQAELASAALFRFGLDTLATGFWIACVATDEWLRGQGEVHIPSSLERTIATLPPQARNMLDEVVNSGFVNDSKRTLLKDVLNPATHGDALVNVVRIGSALAQGKNWAQYLSTLMNELTHNFAVLIRELAGIDLESMAGKYTAAARQD
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