NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208897_1002296

Scaffold Ga0208897_1002296


Overview

Basic Information
Taxon OID3300027571 Open in IMG/M
Scaffold IDGa0208897_1002296 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7327
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → Acaryochloris thomasi → Acaryochloris thomasi RCC1774(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081896Metagenome / Metatranscriptome114Y
F099115Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208897_10022961F081896N/ALKYYTEQHKIKELTMEYKSYKFENEIHSLSSMPETAIEEIIRINKRITEHTWGVILEADKVSDINVYIAQMNKVQINARKANFFVVTDSEDILLKLNDAFNWMNKIFYIVPNTYNHNIDKQYRNSINFHCLKHLEKHVSTPGSMHMNMLKEIGGIQVTVPNQNRVFCFNSKRLVPGS
Ga0208897_100229610F099115GAGGMENLISHLEGPNKHIINLIKLYSGEVVNSTSKWLSDRWFLRKTNFAKHLTCVEISPFKNTKDSNVFVGEKYLGHKVYKSLCDSSTSIDFLSILDPDISLEVLESIDFSKYTIKHFCIAINPVKTKDFKQNKKDIELFMKDKAKLIKQNRTELLY
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Institute for Fundamental Biomedical Research
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