NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208964_1029845

Scaffold Ga0208964_1029845


Overview

Basic Information
Taxon OID3300027572 Open in IMG/M
Scaffold IDGa0208964_1029845 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1364
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078749Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208964_10298451F078749GGAMSDSDGSNNNWYFGPSVIALGALSKRLGHPVAWFDRVSRSSSIDGLPERISQHDFNALHQSIQCQLVPGQWGRFWGKDSLQYAPTVWTLCAAAPTFDEILSSGARLSLLDSSAFIFSLKKDSETASVTIYPVVALAEWQHLMLVQQLALGFPRLVGHQNLVRSVVLAGRPQTIKQLAACEPSACRELIGASEVVFDRAILELKNPTASESWEVIARSVIEPLMGLRLKQQSATYRVIKALADHCAAGAPLDMVSVATALHTEKSTLRRRLKAEGQSFSRILAQFRVQEAGLRLLKADDFAQI
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