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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027573 Open in IMG/M |
| Scaffold ID | Ga0208454_1000018 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 153049 |
| Total Scaffold Genes | 136 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 108 (79.41%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.8898 | Long. (o) | -106.9077 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012957 | Metagenome | 275 | Y |
| F013593 | Metagenome / Metatranscriptome | 270 | Y |
| F015160 | Metagenome | 257 | Y |
| F041659 | Metagenome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208454_100001876 | F015160 | GAGG | MHHARSVLTFLFIVVSLAGATTSIAAEDTSPPSAMSHEVNVLRQVAIALAAGRDAIQDLRGPPIENSNLDRLKLATPGMDCGIARSLIFVSCYSTWFNNKNEAEAMFARIIDYGKAALPSDSWEQVEAVPYIRSIRSIKYHNWKSGAKIDVELLAQPTGEAQSVYWVRVFGWPRI |
| Ga0208454_100001894 | F041659 | GGAGG | MSSEKRFLDEQGMTDLARKSIEVLRQQGASLTELRRLETLLKEGSVGEAFIMSSLLRTILGEISPEASQKKLLLVYRGLEDICQSLVQLSRNLFDIEAWQHYRDAGYETFESYCEGALGIPAVKIQGLMLVKDKCLPRPKKAGPTELLFWFYETVELLSTTKAS |
| Ga0208454_100001895 | F013593 | N/A | MMSLILAPGKHGGLLEVVESIISDGRLILILTDEDVLQRRDAPLKGVFYRLILPLAPAMMNVKGEAFGLIRESLKFTEDGASLEKLARGIGR |
| Ga0208454_100001896 | F012957 | GGAGG | MDKPFLQTLNLYRSKSALQISPSPELALVFVSLASVIPGMENKMPDKNTKKYLWDKKLTASFNFEGALEVAAAASALAKGKESLVADSKGTLPSWYRDPAKCGRDGNAKIIGFYRPKDPPNSSKVRYFLGITENNKSKDGQKIGIALEYPDLFKISRVMEEAALAILGWRKQIEARYNANGHASPGTSDPHTADTTAAGAQATAMANGTAQQSEVF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |