Scaffold Ga0208454_1000065

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208454_1000065

Scaffold Ga0208454_1000065

Overview

Basic Information
Taxon OID	3300027573 Open in IMG/M
Scaffold ID	Ga0208454_1000065 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	77534
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (67.95%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8898	Long. (^o)	-106.9077	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002252	Metagenome / Metatranscriptome	578	Y
F002806	Metagenome	529	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208454_100006514	F002806	AGGCGG	MNAPIFLLLALILLLMTFGRVIFRGEPKGTDWALEVAFIRLEFPPEHRDVAQQIAAGLAEIVGLKIKQLKPEHNLIQIAAWSENGIYARDLITLFLVAFDVKCNPNTTFADVVQKVAERKGSREVLTLGA
Ga0208454_10000652	F002252	GGAG	MTFADVLSWCQKNRAEVRGIYRGKDISLSHKDQQLPATLPAIGEIFHWDVQVADLDHYVSSSDFERIVTGKLTIEGFKSTLRGRE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.