NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209525_1003577

Scaffold Ga0209525_1003577


Overview

Basic Information
Taxon OID3300027575 Open in IMG/M
Scaffold IDGa0209525_1003577 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3503
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013436Metagenome / Metatranscriptome271Y
F029576Metagenome / Metatranscriptome188N

Sequences

Protein IDFamilyRBSSequence
Ga0209525_10035773F013436GGAGGVSQNTARRDLHAKPEDVDVTEPRTRQAEHKQVVRLRRPVAQPAGDGGVGPGEPDADELELIGGIDDLGAADLGPVAPHAHDPDADSGRPRK
Ga0209525_10035774F029576GGAMAGLPEVIGLLYRADWTRLSLSAEVRFEQDGDLARRRENALRTESMRRFGVRPGSPGMPDVEQEPDAERDVYHRWHAALLIAPGRRYRLEYEGDHGDRADGSDGEQAWTLRPPDAAPLPPRDFENGPGLPVPALFRPAGLLARFTLDVGGPVTACGREAIAVTAVPRH
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