NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209525_1014283

Scaffold Ga0209525_1014283


Overview

Basic Information
Taxon OID3300027575 Open in IMG/M
Scaffold IDGa0209525_1014283 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1923
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002584Metagenome / Metatranscriptome546Y
F009038Metagenome / Metatranscriptome324Y

Sequences

Protein IDFamilyRBSSequence
Ga0209525_10142832F002584N/AMPVKPPPVVAPASRGQSSEGLSSVSARAKDTVRRVRAYLRGRGSADLESITKEAKALTPTQWSAALPEQRRNGKLVYLDRPSLERIADLRGDPFETVYRKELVSLLEAQLPPEQVPYLDAFLADDEPKDIAPRLGISAKAASARMRRFQVKLGVILSGLTPRIKAPR
Ga0209525_10142833F009038GAGGMSAKYGGKDSAAWTRELNVILLDGIEDNRQGKDLAHERVKALHPLPQGKDRYPKDFEKWLAKVFEKPSEDGVAPWLSLEFWQHEVDKVLIQGIFARNVTQDEVVQRVRSVWPKLSISWLSARMEEVARTGLPRWMDQAFWATEIDPILLSGLRNASQCQSEAVETVLHAFPQLHVGMIWDRLRRLRKQRTE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.