NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209525_1129601

Scaffold Ga0209525_1129601


Overview

Basic Information
Taxon OID3300027575 Open in IMG/M
Scaffold IDGa0209525_1129601 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)585
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051360Metagenome / Metatranscriptome144Y
F060173Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0209525_11296011F060173N/AFVVVLALHLIQMTGKRYYITTLGAWQRHAGRFANSHWLALNKIASESVSDNSTADDARPIIVLVEADEGAHLALEDDAAFEALPHPLAQKPISQSTRDALASHDVPYGATTFDVAEAVGRAHPLLRHSVF
Ga0209525_11296012F051360N/AMIVREYKEGDLDALRSMHAQQGFGYSFPDLADPLFVSKLVVEDDEGRAVMGSLARLTCEMYLL

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