NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209651_1019145

Scaffold Ga0209651_1019145


Overview

Basic Information
Taxon OID3300027581 Open in IMG/M
Scaffold IDGa0209651_1019145 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2164
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011918Metagenome / Metatranscriptome285Y
F069828Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209651_10191452F069828GGAGGMKRAVVTMAFGTEWDKVLALTQPRIEDFAKRNEIDFILINRSVIDPKDYNKSLLANILVGRGYEQCIYIDCDCLVAKDCDDFANPKEEGNDGFIAFDEGDFLDRKEGMKKLAAQYGGTITPTYYFNFGVFAIRRKHVGLLSLPPLGTVPNHFGMQTWANIQAHLWDIPLSGLDPAYNCMTSVEDQYGLDRHKDAYIIHYAGQSGDLDKLAATIAADDAKLKELGR
Ga0209651_10191457F011918N/ARMKGVGDAMIDLKNRKVNPKYDPFYDTDCAQLWAYRAASENPQCACVSVVLASNDATKLTTKVWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL
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