 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027583 Open in IMG/M |
| Scaffold ID | Ga0209527_1000003 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44087 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (79.07%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Algoma, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000653 | Metagenome / Metatranscriptome | 959 | Y |
| F005810 | Metagenome / Metatranscriptome | 389 | Y |
| F006948 | Metagenome / Metatranscriptome | 361 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209527_100000324 | F000653 | AGAAG | VAEQRQLTKGKAALLLVLSAAGAIASATLLHGWHIYLGFAVVGIVLFIGFTRWNRR |
| Ga0209527_100000342 | F005810 | N/A | MNENDYLKQIAALTGLQHYMLQGPWGRKSGSVIGTHDGYVIAIGFLRSREAKIAILVRFKKVENPELVKSAVGQNTAVPKKHGKLAEVGNDFLRWEWKYSFTKPKAEEVARLADALRESIKPVAQGFDGRCEHCTSASTQAMTLMNGVPIFICAGCQEKVHHELDQAAVNYDAIVPNYPNGLTLGIGAAVLGGVAWGLVAYAINRIFLYGAILIGYFVAGGVLKGTGKVTRFGQVIIPILTVASVLFGDAIFYTLAIMKHESAPFSTKLLGAVLSHLWEIESEGGGVLTILFALVGAGYALYAARKPKFKAAFQQLGMPNV |
| Ga0209527_10000036 | F006948 | GGAGG | VRVKSVPVAFAILFVCVVSAPGASAQNPDTMMPEQSVAKGKQLLGDLINALGGPGYTEVRESHCQGRRSQFGHNGEPLHPVLIDFSEYRRYPDKVRTEYISKGRNTILASLIGVDGLDFTHGGIVISLYNGDHGWTFDRSGVSELPAGAISDFQEQVKRNVDNLLRLRLKEEGISIRFGGSDTVDLKPVDWIEITDSQERKFRLAVDRSTHLLVRSVVITKDEETQQINEDVSIYSNYQLKDSVWMPIQISREHNGRRAAQIFYDSCKFNPGFSDDIFDKSSLSKQGSQALVKKSKN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |