NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209527_1000061

Scaffold Ga0209527_1000061


Overview

Basic Information
Taxon OID3300027583 Open in IMG/M
Scaffold IDGa0209527_1000061 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21142
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001032Metagenome / Metatranscriptome800Y
F002309Metagenome / Metatranscriptome572Y
F044122Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209527_100006112F002309GGGGGMEHFTTGKWIDFVNQAVGASEKHLMEQHLKQGCKRCMKTVSLWQKVRQSAAAEANYQPPEGAVRLAKAAFAGAALAGQKKGTESGIKVLFDSFLQPLFEGARSAGASSRQMLYRADPFQIDVQVESKLGGNFIVVTGQLLNLSTPGIIGQDARIALSNMRGQVVNAVTNQFGEFSGEIENSGDLQMTFASPGSPPIVISLRDALGSLPGVGR
Ga0209527_100006118F044122GGAGMQVPTGRYEKRAARAVRVELLRLDESRLSERTVTENVSPRGARVVTEMICAPGKHVLVTAPEEGVKSLARVVYCQRVDPESTKFVVGLQLVVRVEDWGKPASRE
Ga0209527_10000612F001032GGAMGLGGMDPMLGKRNCTVGSCNSAATITLDHQALCLNHFLFRCYERLDGLDARGRKFSAEPIDMVSMRAFIEECSRKALDVSLQSQNLSNLQRGRLLDILLWAGELFLLLRAPRLTLAQSIASSEGRPAARAASPNL
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