NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209527_1018564

Scaffold Ga0209527_1018564


Overview

Basic Information
Taxon OID3300027583 Open in IMG/M
Scaffold IDGa0209527_1018564 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003479Metagenome / Metatranscriptome484Y
F081106Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209527_10185641F081106N/AAAHDGDSTQTLASGHEIPKASLPEFRDTIHFRELKRFVFVPSLTDFTSVGETLGIVNLCEMFSSVGQKCRVQQSRLVNFEEIKGDNAILLGGNQSWSGRVFLNVEGFHFQSGVILNRNPQSGEQSVYKPEFDPVTNQLTRDYSLVLMLPNETKEKRVLLIYGIYTQGSQAAIEYLTNPERMSELRKALQNLSPDRKTLPPYFQLLLTTTVENAVPGKSSLVALRIIPI
Ga0209527_10185642F003479N/AIQYAMPNLEKDALRNRFALIEQASNSLDALMEKTSKMVDAQNATRLMLFSLQTTKIKLDADRSDTQSKIAALYVPPLSDKPLKELVAEKQNSELNEQKALDKLSRQSAWDVALSVGVHQQVNPVAQGAQPYGAVSVNYNLASRAINKHLDRAVIAYDEWKKVQEGDVVRNEEVLRQQLVDSVLVQENRLRTLLDQSAQIDKNLQQVGNPDTSAALDFHNQLTAAQLLLQVETGDANFRLDRLREYISKNY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.