Scaffold Ga0208966

Basic Information
Taxon OID	3300027586 Open in IMG/M
Scaffold ID	Ga0208966_1000016 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027586 Open in IMG/M

Scaffold ID

Ga0208966_1000016 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64675
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (73.08%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

64675

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (73.08%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F004006	Metagenome / Metatranscriptome	457	Y
F005000	Metagenome / Metatranscriptome	415	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005587	Metagenome / Metatranscriptome	395	Y
F018177	Metagenome / Metatranscriptome	236	Y
F023361	Metagenome / Metatranscriptome	210	Y
F033808	Metagenome / Metatranscriptome	176	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100001612	F005587	AGG	MNNYLVAAIRKLKPNSEFSFTNNDYSTIKWDALEGTAPTQAEINTAIEQVKADEITEATTTAAAKAALLTQLGITEEQAKLLLS
Ga0208966_100001633	F001106	AGGAG	MSFDTLKVAELRKIAEDFAVDTEGLKNKNDIIAALAEEGVTWSVYNKTINKVEEETEDMLEETLPKFDPKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFVAMVSDKAQEIFDKEEGFRLANPKEVQDYYN
Ga0208966_100001634	F005054	N/A	MAEILIGSQSPITHQVFWNGDVATADSLPTVKVYDVTSDPLVSPAVLPTTLLVTLTSALDENNPGTYSVNIPYSLTNRNKTLSVKWEYAVGGVAVVQSYEIYVITPYINFNNIQDLDFSTDPSDPNYKSYKELLKAERYARKLIGQYTGQSFYLEDKLYAVYGYDSDTLPLPAKINSLHSLYANDILLVNEITNVDNWNYPVQISESGYGIRINRAAMLDNTVYTANGMVPPTIHDYSGGFQSGVCYKVSGRFGWDKVPDNVKLAATELMKDYFSKETAWKNKYVKSISTFDWDFEYTGNAYTGTGNAFADNLLAEYVLTNKVEII
Ga0208966_100001635	F001229	AGG	MNSIIDSVLSMNLDVYRQSEIQDADTGAIVKEFNYYKTIPCHAKGIISNTSSLIGGGNKQSFSNKYADEQVIQVRTAEKLTAREKVTNIRDADNNVIWNEINYPSETPTVFEVMGTTPIIDPFGHVIAYNSSMKRSENQKIGL
Ga0208966_100001639	F023361	N/A	MAVIAKTSSSKTEDETLTILMEACAVAIESQLPELAADMDKLEGALDMPTINRILEVCGGIKLDDPNLGAAAVLAGQNSI
Ga0208966_100001655	F005000	N/A	MYQHRQIKKFQISVNFLDDSDMIRIRNQYENLLVGNMKEQGYVRVLDIDTAFSVEFTGETWQFLMTIQGIYVGRRKAWQSEGVTQGKLIPRNTPKVTSSRS
Ga0208966_100001660	F004006	AGGAG	MTDDVQGLVTSISLNQVLVAILEEHTKLTVPTSKFLEASSEEKELVIDYDENNLTFTFSLRLKD
Ga0208966_100001662	F018177	AGGA	MPSLDEFINKPEKVYKAELERIGGAKPCSKCDKDSVEYFWNAVETTMSWECPDGHKNTFVIK
Ga0208966_100001664	F071247	GGAG	MGSNNKIPFNPTVIKDGRIVRIRKDGTVKADLGPYKLKSKKAN
Ga0208966_100001665	F033808	AGAAGG	MEIFLFSGIAIGFLIGYPIGLFIDNLNKKENKKNGR
Ga0208966_100001672	F000369	GAG	MSEIELSAHFDRMNRVVSELLKGSNPTQIAAITGFKRGDVVDLIDDWKNVIHNDTGARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLNVKATSLKLIADIEGKRIGMLQEVGLLDNAELANQIADTERKQDILVKILKEVTASCPKCKIEVAKRLSQITGIVEPIEIIEEVNGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208966_1000016

Overview

Ecosystem & Geography

Associated Families

Sequences