Scaffold Ga0208966_1000365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208966_1000365

Scaffold Ga0208966_1000365

Overview

Basic Information
Taxon OID	3300027586 Open in IMG/M
Scaffold ID	Ga0208966_1000365 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14604
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (72.73%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054852	Metagenome	139	Y
F068813	Metagenome / Metatranscriptome	124	Y
F098908	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100036518	F054852	GGA	MAGMEIIYPGNMSLKVDRDGNATIDETDTCDCCNKQTSKAGGVMALEMSIWVCADCRPR
Ga0208966_100036519	F098908	AGG	MSVEVLLTQADLDGALWIATKRTANANDKNYKHKYNSEHLQPDYILKLNWLAACAEIAVAKWLQVPDFVLTSDTFKGVPDVPPDWEVKHTEIDTGHLIIQENDRDSDRAVLVTGSNPFVIRGWLPVSYCKDDLYLKTTSRNTAYWVPQNELVKVG
Ga0208966_10003658	F068813	N/A	MARLKITRDTGVVEEYDITPAIEVEFEAYAKMGINKCFREQEKQTDVYYLCFLAIKRSGQTVPLFGEAFLNTLKAVEVLDSDPLAG

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