NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1000739

Scaffold Ga0208966_1000739


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1000739 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10274
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (58.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F037227Metagenome / Metatranscriptome168Y
F073565Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100073912F002060AGGMNQSSLIIAICAAMLSGMGTAIIAGFRDNVKEKRRQVERDQDHLRLEVKDLKIELYKIDRELTEWKDKYYNAIQELILVKAELENTLSELDHIQHHSESLDTEFLI
Ga0208966_100073918F037227AGGAGMPNDKQTVLEGIVEDVGIELYQKVWNAISKEDQTEESSKALAINSRDTAVFVIQRFMDKFNDAAEELKDK
Ga0208966_100073923F073565AGGAGMSDGKDLTGFNDVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK
Ga0208966_10007395F003582N/AMNVYKVKLEVEVEIEAFNEDDALDYSSDIFGVDDEIKNVKVVSVKEK
Ga0208966_10007399F000473AGGMFIDKSAEKQAEHFKYGINHWNGEPMKPVFYTKEMAQKVREIKKPVPDLLMDIVLYPDFLTIRLYEDNFVMYDGIKKEMVINYVTKVKKLLESYGVRCELEGQPSRGIL
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