NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1002091

Scaffold Ga0208966_1002091


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1002091 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6211
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010619Metagenome / Metatranscriptome301Y
F019602Metagenome / Metatranscriptome228N
F090380Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100209111F090380N/AMKMEQILSSLGDIDSRMLSPKYQILDSIRTDNTHVKEFLQNFQSEFWQAHKIKIHHSVKVTKERLVRDRVLVFIYKKQNFTYVNDVLKLVRKYNFPEKYLLRLMSEYQTCNCIMFAIEADGDIVKYKVYFETPLKNFGFGFKWTKSKSVVTRYDLKLTSEYKAAIDASGFNLYPEFLEKTKINRVISVKDENTSKRGFELEFDSLYLKDISRDVSNLTFVNIYDTLKNLANLPIIHFSGGVESNGDKYFNLYFVVL
Ga0208966_10020913F019602GGAMDDRDVIERYILEAWDKGLTGADVVTYVQYMSSIPSFEIEPVLQNLIARMTE
Ga0208966_10020916F010619GGAGMQNDPIDFENSHPCMKKIIDSDKLLPVTKSVAKMLMRNPYISLGKFFKKLSDENLQVLSEIIEEGDSEFNDGMEDIVLMTEMLSRAEGVPSQCIEDITENVNYFGACVTCVSLARKGLVRVYYENMSFGTDQGEKVLVERL
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