NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1002216

Scaffold Ga0208966_1002216


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1002216 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6037
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005387Metagenome / Metatranscriptome402Y
F013886Metagenome / Metatranscriptome267N
F016369Metagenome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100221615F016369N/AVKNNKAFTLIELVLAITILLGIIGAVVINYDSMVGNSRYFEARENLKTYLINLKHQSAFQQKQFELTFDPDYNMYSSFEDFYLLEAVTNDLKILDTSATKIVFFLDGSVQESYIVTSNLEGTITNTFIINVIGNVNYEGNTNIVIEKKESDIE
Ga0208966_100221617F005387N/AMEKLNRKGFFSTLFGGIAGVVAGSTVKASEPIVPPPVVETVVTCDKLVFTHSSGASCVMSFKDSDNFTVRVNNSEHISINIHSPLKKPTFVKTETFSVYGNTQSQMTIVSNGNLGLGTAYPTAKLDIIDMRG
Ga0208966_10022162F013886GAGVPVNFVSNVLKNMKNNMEKPNAFAFKAKIGESQEIQLCMCIRENDKWMENDIFSIPEGHPELSPYIDEQLFNVVFIGYEKDDSKEGFWITHQNSYFMKSDTILSEDLFNKGEFFNTVEKGYQHFYEQSITSEWQGGQTQTGEQENL
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