NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1004329

Scaffold Ga0208966_1004329


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1004329 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4313
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037719Metagenome / Metatranscriptome167Y
F071976Metagenome / Metatranscriptome121Y
F075702Metagenome / Metatranscriptome118N
F089888Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100432910F037719N/AMNEELKALVLKAGAPKEVLNEFWFNIFCEKFANVLLTEAEKEVFGETCE
Ga0208966_100432912F075702AGGAMIQIENLTEYQVEMLEHMWSLDSVEEYEEWYALLDEEDQQLADSLQQMIILAEMDDLMNGCKDAKEVLKKFAL
Ga0208966_10043292F089888GGAMKALALLLFSFSLSAQAQVQAFTYNYQVTCGPTIPIIEFLSKTQKEELTWTGSDISDGSTYSLWQDTDGNWTLLKKNREIACIIGSGIKPKII
Ga0208966_10043297F071976AGGAMKYRVIVNGVSFYTTGAAIKRGVGDFVGVNTVVRQLFADMHNAIGIASTLTVYDHKMNRVSYDVQISKV
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