Scaffold Ga0208966

Basic Information
Taxon OID	3300027586 Open in IMG/M
Scaffold ID	Ga0208966_1009409 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027586 Open in IMG/M

Scaffold ID

Ga0208966_1009409 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2917
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2917

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F007688	Metagenome / Metatranscriptome	346	Y
F012456	Metagenome / Metatranscriptome	280	Y
F057380	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10094091	F007688	GGAGG	MTVDYKIDAMFELRKFLWTQLKLAGMFDQNDYYSDNLGTEIIPIVPVQQLPEMDQFLNGKKHIVYDKIGLSYEENWLICCEKVLFTIYSIDVTEIYEIR
Ga0208966_10094092	F012456	GGAG	LDSSVALIQTASGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTSNAEFKNLFKTTIFTQIEKDFGQYVDAQARTKPKSLHHVYEWNKTGNPTARLFDLHLIDTGGLSFRIGRDFKLSKSAVPSKNKKQKKRYVFANKASVMEEGMPVVIRPRSAERLVFELDGATVFMPKGSSVTVKRPGGKAATNQFALTYGRFFGGQLVNSSIKSSGFQRIFNAKIARALNVPINIKKVQYSFSAGKIRMQADAALSSSFGGSL
Ga0208966_10094094	F057380	N/A	MAEIYVNSNSPIKTKIYWEGELITPSSVVTAKIYDVTKDPTNVILPTTILTTINATAVETDIGTYQIVLPFSYSSYPRNFKIVWQYTVYGGAVGTHTTLANVVTPYININEEIEDLNFGADPSDPNYKTYANLQSAERYARKIIEDYTNQDFYLYAGEESIYGNESDTLPMPSKVNKIYKIYSNDILLVDNLSTPKVNNWLYDPIVSETGFGIRVNRANLLDNVVYVANGLVPPTITDTFYGVFSKDVKYRVVGQFGWESVPDKVQLATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNASASKGTGNLYVDQLLQPYVITQMVLI
Ga0208966_10094095	F001106	N/A	KYMSFETLKVAELRKIAEDFAVDTDGIKSKTDIVAALAEEGVTWSVYQKTIKDIEDAKDEFNEDAEEILPRFNLDAQPEDTVLVRMTRDNFRYDIIGFTFTKEHPFIAMTEDNAQEIFDKEEGFRLATPKEVQEYYN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208966_1009409

Overview

Ecosystem & Geography

Associated Families

Sequences