NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1011872

Scaffold Ga0208966_1011872


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1011872 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2589
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036553Metagenome169N
F083709Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10118722F083709AGGMENIDVYSKYPVTNNEWLLYSSFDVNINLRQLFGVSLGTEMMRVCLSDGGVSDVVKSEIVKFNDVSDFYMRKIMRGQLFLNFSAASFNLNKNHNVWDRYNVDPWNRQFPYFVDDLASDYYNSSDNKIRYGHWVVYRDRVVSSTSSMYKDVYKASIINNGIPLMILTTTSIEGVSVACLDVVVV
Ga0208966_10118723F036553GGTGGMNNIDLYTKYSITNKYWNLSIQPKVDYVSLGDLIRGLYIPRYNLGSNVGLHPYGNNKLIPFDVTFECGKLEDKIDNYYYRNIIPPCLFTNDDYKNLGTYNTDPWDRTFPFYMTGAVSKTYVDNIHRSYLSYSYVMFYQERLIRSGPLKVDLMSGKAPLAIMHVTSLEGEPIVCLDIIH
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