NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1032728

Scaffold Ga0208966_1032728


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1032728 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1513
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017266Metagenome241Y
F031870Metagenome / Metatranscriptome181Y
F034176Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10327284F017266GAGGMVYPKVVLAGRQMGKSQVNDLIKHFYANMTPMPKIKWQELPGFKLQAYVDDIQPRGFERGLREDDMDPVQAWCEQSNCGKRISFNIWQFKSRKHMTMFLIRWSS
Ga0208966_10327285F031870AGGTGGVIDYTDYMVMPCGGVAYYDEPTNGMNYFCAQCECVVGSDAMPKSCKDEEAKWEMWAELGGKGWDYFAEPDEYF
Ga0208966_10327286F034176AGGTGGMKHNYVKHRDNVGDLEYFISKFECRVEDSREYNQHVRPAPYYRDFYDTDRSKIETEIVPMKAIHLTRDNLARLVGEQEHMKRLSDDREYSKKIWADASRDQMVRDKNPAVEKAYQK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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