NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1035761

Scaffold Ga0208966_1035761


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1035761 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1444
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045546Metagenome152N
F071126Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10357611F071126N/AIEVGKGEGLYLEKGYILCVGLIGNGPSAISGGLSPSGITVFAQGGFY
Ga0208966_10357612F045546AGGCGGVSRKKGSDNFSFKGHGGLDAVKSISTIAGSDNTNQLSNPLPFERRFRPATGTKNFSVLSDYNYASLWVRWRRGYELSMYTQGAYSGLVYSSFKYYISGTAGVGGYIPGIFFVYPTVRADTRMHIVGIRPRDTFNFLDFGISVQSVTQFDATTYAVILSQRFGSPISFFTGEVLSNRFNSNGTEKSVGYNNYTVIAVGLNGVKTTPTINPDFDTLFLSFSETESWSVINSTTLSVPAIGPPAVGEFLSTEIRMQCTCQDFLNREGFNFYNASLNQRYPYAKVMNIDPGTYDAGPDAITRVSNSNDYPGYARTFGFIYLDQLYTAPTYVDVASYSDPSLYYFQPKWCKHIFASFWDMQRKFNLSSVTSSWLPQPTDEPMNEYYREKFEVDLTKQMSFLKRSHDFNWWQRYSPSLSGLPKQLLYSDKYNMIAKTL
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