NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1050014

Scaffold Ga0208966_1050014


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1050014 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1194
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F013892Metagenome / Metatranscriptome267Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10500141F013892AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGHNMLGKLADAVIKARPRWNDSSYATRITISQMVADEWNMETGWGLYV
Ga0208966_10500143F001043AGGAGMSDYRDGFQDGYNFAREEIIDKLREIDISDIDGFLLDKLSDMIEGNKI
Ga0208966_10500144F000311GGAMYFELTAPNQVAFKRAIWEADITGLDPQEMNSLTFNIGTGSIEKVSRIRDKYNLKETYLSEFEPTGYSRRK
Ga0208966_10500145F071228N/ANLLVTYKKIAGTYAAPEAPEYITQKVVDLEWALAQGRRADELYNGLKLKVNELEELLVELYNPNYTKEEALQQIAELFGFELSKTVTVTGTIAFEVTVQIPLDEVDNFDAHYKLGDELSLTSYGSEVEVNDWSIEDTNVDWD
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