NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1059313

Scaffold Ga0208966_1059313


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1059313 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1083
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019103Metagenome231Y
F054585Metagenome139N
F088903Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10593132F054585GAGGMNWLAAALIALVLGTSHYLDWPSEFEAAQDAAAAYRAARTEQERQQRFEAAAQAMCGENAGWKLLDDGSIQCFTHRGFKTRKVQL
Ga0208966_10593133F019103AGGMSNHVSQTGYKPTKTDLKGLFNLVFETAGGLTLDCYLEYEAEERETRDEPGSPASMGLVWALVEGVDINEVIGDLAQTIEEEALSDLEDQIEDAALERGAA
Ga0208966_10593134F088903AGGAMKATVTNAKLLGAQRSGWAGFKHRLMAQLGIPQNQFDRWNVPTDWQQAFCKANGRQLFKTSKATP
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