NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209220_1000287

Scaffold Ga0209220_1000287


Overview

Basic Information
Taxon OID3300027587 Open in IMG/M
Scaffold IDGa0209220_1000287 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19715
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001175Metagenome / Metatranscriptome756Y
F001699Metagenome / Metatranscriptome649Y
F062540Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209220_100028714F001175GAGMRSALGSGAVAVLIAACGPSSPCAGHQFDRLERFSRPYAGHWVVTRGDSLTFPDAPLMSDRFRLADIVLDTATVVVGRDCQFRGRIIFRVPRAETLAVTWFGQPEQAIVNGWPADLGPFAGLALVGAGRDSLRGSVLIDSKMGVQARPGLTAQFVAGRLSSAP
Ga0209220_100028720F062540GAGMSVPWQARAALIWAIVGPLLLVYAATRVRHGRTRVHAGLMLAAVTVTVTLLVAFAFVRAPSPRRPALMALPIFKIHLAFAFSALAGMAWQLTSRAVPRLRSLHRHTGPYIVLVWCLALVTGIYNFVFLYVMGDATR
Ga0209220_100028721F001699GGGGGMKILLRHFLIALLPLVFGLAASWGFAFTQDKCGRLVGPIFAPKCHWMQLEYQLGFLMAGTLLGCLVAALLGAWLELRSRRAVQRADLNPGAPS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.