NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255118_1014897

Scaffold Ga0255118_1014897


Overview

Basic Information
Taxon OID3300027593 Open in IMG/M
Scaffold IDGa0255118_1014897 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1502
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F009266Metagenome / Metatranscriptome320Y
F060914Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0255118_10148975F060914N/AVQQKEKQLKRLIKVRSDISSSIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDIKELKAQGIL
Ga0255118_10148976F002398GGAMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNIIEKNKFDFFAYLDTIGIEHSKVGSYYFFQRKPK
Ga0255118_10148977F009266AGGAMTNKERKILDKEIQYLCDYQDRVKAIREYTGIHPHKTFLNEVETIESLYRSVLENRKQCKSTYFSVGTAGWFVVYLRDKKKYKDGEDFSIKIYH
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