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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1000326 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20981 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (18.18%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001808 | Metagenome / Metatranscriptome | 631 | Y |
| F003299 | Metagenome / Metatranscriptome | 495 | N |
| F003327 | Metagenome / Metatranscriptome | 494 | Y |
| F004234 | Metagenome / Metatranscriptome | 447 | Y |
| F004451 | Metagenome / Metatranscriptome | 437 | N |
| F008546 | Metagenome / Metatranscriptome | 331 | Y |
| F009004 | Metagenome / Metatranscriptome | 324 | Y |
| F015420 | Metagenome / Metatranscriptome | 255 | Y |
| F029102 | Metagenome / Metatranscriptome | 189 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_100032610 | F015420 | N/A | MKRLIKYLTPVGAEQIAFAKALMVVVTAVISIVFLFPLLNLLS |
| Ga0208974_100032611 | F004234 | N/A | MNFINLFKRDNTYFSNWTTDYDSDVYIAGTIEPFTYDATETDDGDMSLFILDEVELNLLKSKL |
| Ga0208974_100032612 | F003327 | N/A | MTEFTQLAIKVQDEIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEEI |
| Ga0208974_100032613 | F003299 | N/A | MKRYKVVYKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLIMLIEEV |
| Ga0208974_100032616 | F008546 | N/A | MKKTAVEWWKLLIVFVSAIVLEANSIAGFRFLMDEQWMGMVMMVAINPFLCLPMNHYTIEVKTFKQRALIALAFSLGFAVGVMTIRPFFI |
| Ga0208974_100032625 | F004451 | AGGA | MRPILDQYIAAHYKEIRKYTNYFLVRMKSTISADAVINNSFIYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLWDKIREDMQYQNNMAVIETYRGRITDRIKLIVFQCYFDKGYSTARAMAEYFRIPVTSAHYWIQEIKTDLKQLRDEN |
| Ga0208974_10003264 | F029102 | N/A | MKHSGILSFLTFGFGYLSGISLVFADQLHFKLLGCLLISYLTFLLASEIESKE |
| Ga0208974_10003267 | F001808 | N/A | MRYLAIILLLSSCSAQYHLNKAIKKGYTCEQTGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYKTTYVPRTRYQERLAYKLKVKTIYKDRIVQKAQAKATRPRANGNLSLLFVGVGIGLLLSYLFKFARDKYLW |
| Ga0208974_10003269 | F009004 | N/A | MKTFNEILDYLEVQQQEDKLTTNQLHLIIQTLTTFLNKEQLQEIENLFNQFKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |