NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000532

Scaffold Ga0208974_1000532


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000532 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15632
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F009679Metagenome / Metatranscriptome314Y
F031795Metagenome181N
F036209Metagenome / Metatranscriptome170Y
F038217Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100053218F031795N/AVTTYTPYPKVVFAGSVEYTDNTISSIGISLGRRDIYEQAQPGIASVRLWTDADTALNVNLSDSVEIQIQDSTAAYKTIYTGIISDIDITLDAYGSDGSVAIYNITAVGPLALVNKHTTGAVGFAKEFDGTRVLNILSDVFLQDWSEVPGDLIWSSVSNIATWGNWDGTNQTLVDNLIADIDTPGTYELEAYSGGLTDALSLVQSAAQSGRGFLFEAPDGSLHYDSYGARSVYVPLTLTDDDLLAAGLRQAAQWSEIVNDVTVTYRNNGEAYAADYTSQQSYGQLAGTRSTTLHNGADAEIQATAFLESRAYPRTYPEELTIPLHSPTVSDATRNALINMMVGSAVYTQDLPAVFGTTFDGFVEGMKWNLTRYTSDLTLVCSALSETYPHKVWLQIAPTVTWASYTPSTEEWQDL
Ga0208974_100053220F036209GAGMVMADKVTVKMTPDSRDFKSLYKAFREMDEGAKKALKDDVTSISQWSATEMQSSYNFNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPDRSPAQGRGNEGYGIFITLKRIQPELTRRWKDAVSKRVIEKWDDNNG
Ga0208974_100053222F009526N/AMVTTNSPADRKRRHAHKPTQHRDGHNQLERQVMPATYITGRSLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKFATLNVELYLDDTSSAGIISALWDAANSSPDTSLAFTFDVNGDTFAGNVFPVFPTVGGAATDVLTTSLSFVVEDGTVTRT
Ga0208974_100053223F009679AGGAMALITLSELKAVLGIGDIYADAIVQEVVDAAENILLSYLIFDDVAIKSVSLSGNVATFYCYENTFVAGQALTVTGCGSPFNGSRTVIDSYTGPGEPFFTAAITNADIIRRNIIPTGRAVLTSQATLYDSGYPEVSEACLAIACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0208974_10005324F038217AGGMTLKNPEAPEDKPMGIYLSLNSALSVANWIAPTDVAAMTLARRIALALDTAFDMGDLKEATPLAAKYLQVLQQLHLTVETRTLGKQGEENDGTNHVGNYLRLIEAKDRKPKPKPAQRRASGIGTS

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