Basic Information | |
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Taxon OID | 3300027608 Open in IMG/M |
Scaffold ID | Ga0208974_1000532 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15632 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (62.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009526 | Metagenome / Metatranscriptome | 316 | N |
F009679 | Metagenome / Metatranscriptome | 314 | Y |
F031795 | Metagenome | 181 | N |
F036209 | Metagenome / Metatranscriptome | 170 | Y |
F038217 | Metagenome | 166 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208974_100053218 | F031795 | N/A | VTTYTPYPKVVFAGSVEYTDNTISSIGISLGRRDIYEQAQPGIASVRLWTDADTALNVNLSDSVEIQIQDSTAAYKTIYTGIISDIDITLDAYGSDGSVAIYNITAVGPLALVNKHTTGAVGFAKEFDGTRVLNILSDVFLQDWSEVPGDLIWSSVSNIATWGNWDGTNQTLVDNLIADIDTPGTYELEAYSGGLTDALSLVQSAAQSGRGFLFEAPDGSLHYDSYGARSVYVPLTLTDDDLLAAGLRQAAQWSEIVNDVTVTYRNNGEAYAADYTSQQSYGQLAGTRSTTLHNGADAEIQATAFLESRAYPRTYPEELTIPLHSPTVSDATRNALINMMVGSAVYTQDLPAVFGTTFDGFVEGMKWNLTRYTSDLTLVCSALSETYPHKVWLQIAPTVTWASYTPSTEEWQDL |
Ga0208974_100053220 | F036209 | GAG | MVMADKVTVKMTPDSRDFKSLYKAFREMDEGAKKALKDDVTSISQWSATEMQSSYNFNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPDRSPAQGRGNEGYGIFITLKRIQPELTRRWKDAVSKRVIEKWDDNNG |
Ga0208974_100053222 | F009526 | N/A | MVTTNSPADRKRRHAHKPTQHRDGHNQLERQVMPATYITGRSLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKFATLNVELYLDDTSSAGIISALWDAANSSPDTSLAFTFDVNGDTFAGNVFPVFPTVGGAATDVLTTSLSFVVEDGTVTRT |
Ga0208974_100053223 | F009679 | AGGA | MALITLSELKAVLGIGDIYADAIVQEVVDAAENILLSYLIFDDVAIKSVSLSGNVATFYCYENTFVAGQALTVTGCGSPFNGSRTVIDSYTGPGEPFFTAAITNADIIRRNIIPTGRAVLTSQATLYDSGYPEVSEACLAIACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG |
Ga0208974_10005324 | F038217 | AGG | MTLKNPEAPEDKPMGIYLSLNSALSVANWIAPTDVAAMTLARRIALALDTAFDMGDLKEATPLAAKYLQVLQQLHLTVETRTLGKQGEENDGTNHVGNYLRLIEAKDRKPKPKPAQRRASGIGTS |
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