NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000622

Scaffold Ga0208974_1000622


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000622 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14461
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039639Metagenome / Metatranscriptome163Y
F061859Metagenome / Metatranscriptome131Y
F062765Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100062220F062765N/AMGPASTGWYRTRGLTQTQTKIATENSMFTTEGEPYTSETIIMQYSCGRIDVRGISDEPYGDEIGVPPMLSYDWRRFGDWLDDVQTMSVWTLENLVEAYEQHNPKITWDTHDR
Ga0208974_100062223F061859GGAMTIEIALIILGLALAACYVVLEYQKLAKPPYQEPVKPDMAEQWKAATKADTLDNIDNWNAKVGDKIWHKEAIPELEPTPINPQAAWPFPHTKP
Ga0208974_100062225F039639AGGAGMNIDREFVKWFYEAEYPEQGSNRRQVYSTTENSQNINVIDYWMREAFKAGAQAATNSYEVNALDQFEAFNINRNYPL
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