NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1004158

Scaffold Ga0208974_1004158


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1004158 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5105
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009945Metagenome310Y
F026794Metagenome196Y
F057879Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10041583F057879N/AMSTEPSSEETNPRDTVRPVPVPAGSEQEPESPFAGAAQVPPWEL
Ga0208974_10041584F026794GGAMMHSGDNPGSISERDLRVTASQLRAAENDAREATRGEVTFDEIDRRYADPISRKELTALLIFITAFCEGRTVWCYELKERHGRPMPTWTPITEWDGHFRHECLSLTYRTDNPFATE
Ga0208974_10041587F009945GAGMSAALATFKRTHGIATHRLAGAGHRYAWMAFFATITMRDGTRRAFTELAHEYSMADLMRRNKIADADTELEACQFLAERNGIPWPADEPKKRKAKP
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