NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209221_1000089

Scaffold Ga0209221_1000089


Overview

Basic Information
Taxon OID3300027609 Open in IMG/M
Scaffold IDGa0209221_1000089 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54265
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000157Metagenome / Metatranscriptome1872Y
F000372Metagenome / Metatranscriptome1220Y
F000633Metagenome / Metatranscriptome971Y

Sequences

Protein IDFamilyRBSSequence
Ga0209221_100008916F000372N/AMRKSEPVTGPQFQAQPPPQSKVVRRWTVIAAGLLVLALALVVIYTGPSAFYSPVALVVVAAIGLAALLLQVWFRRDLPIHSPLWLNILGIVCAMASLFSDYLRMTRGMLDLVAFAAVVCFGISGSLILHALRRRARPTQSFEVE
Ga0209221_100008930F000157AGGAGVAADDLSSILSRVVEIEAEYDIRLLAQQLGTNYRSLMYWLRGERQLPADLLPRMCVLLKNYKALDFLESQAGRVAFKLPDPDVTLERELVAVSHLIREVGEALESVAETLADGVVEENELRVTIPKLESVIQECASLKYLLEDLNKKKKKKTKNQR
Ga0209221_10000895F000633GGAMRFEVNGQMFFVNFVPEEGRWYCYAPTQTGVQKIPVSMDASPFEAYTVDVDEQAKEVVN
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