NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209221_1008450

Scaffold Ga0209221_1008450


Overview

Basic Information
Taxon OID3300027609 Open in IMG/M
Scaffold IDGa0209221_1008450 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2635
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F044385Metagenome154Y
F069867Metagenome123Y
F098478Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209221_10084503F069867GGAGGMPQKIHEYTEAIGKTVAKVTVTNESDWRNITVKFTDNTAIHFGIRPFIQIEPEQVDWSTGNGKILRSYPFVHEKEG
Ga0209221_10084507F098478GGAGGMSKAKNSKTVDVKKAAVGDKSEPNGNGKPEKAKVVKTQTLTPANTKLVKRGFVKMFVDFVVKRGSVTIDDLAAEFAGRQVEGKKITKQRVLRYTYWCVNKGILKAK
Ga0209221_10084508F044385AGGAGMLIRNNDGEIVGEMNVSITQEGTVIRTNTMYQNGRPVTQNISIRESHGEVRTTNVIGGKFLP
Ga0209221_10084509F006757GAGVLPPVKGKAQMALLNLTAFREISTSDLIAMAQAMPGGTKVHIPDRLTAIVLLLGTSPTDA
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