NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208736_1005637

Scaffold Ga0208736_1005637


Overview

Basic Information
Taxon OID3300027618 Open in IMG/M
Scaffold IDGa0208736_1005637 Open in IMG/M
Source Dataset NamePolar desert microbial communities from Antarctic Dry Valleys - UQ255 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3154
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctic Dry Valleys
CoordinatesLat. (o)-78.0486Long. (o)163.8053Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016802Metagenome / Metatranscriptome244Y
F064235Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208736_10056372F016802AGGCGGMRRHRLQAQARLEDGMSEGRIDGSALQLVTVCLSDEGAGEVSDEQGRPVAPAPPVVSHLRPSEARELAFCLLELAELCERRSEGWQ
Ga0208736_10056373F064235AGGAGVQLRLDLAESPVPAVALWELVGEQQRQGAMSLLAALIAQTVAPEAVGDEAASLAGAGASGGRHE

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