NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209753_1030777

Scaffold Ga0209753_1030777


Overview

Basic Information
Taxon OID3300027622 Open in IMG/M
Scaffold IDGa0209753_1030777 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1601
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)8.0Long. (o)-156.0Alt. (m)Depth (m)550
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008625Metagenome / Metatranscriptome330Y
F013899Metagenome / Metatranscriptome267Y
F015350Metagenome255Y
F032036Metagenome / Metatranscriptome181N

Sequences

Protein IDFamilyRBSSequence
Ga0209753_10307771F008625N/AEVTEISGNRLVWRHIQKENQRMILDPLGYDALKDIDEINSRNRRKTDDPYIRATIENADHKRWKNNLAERR
Ga0209753_10307772F032036GGAGMKWIILVYLTIAAGTTEGDIRYTRLEHPTKDFQECIDIEQQINDIIHRGRESETKYVRFLYWEYKNMLHEIKAECIYADSPVSNPKWFSEK
Ga0209753_10307773F015350N/AMKKVVKWLIIIMMAILMGWQYDAIQKNFHEIESRIKKFESVDLFNHVESVDILNEKQMELQALEKEIKEKFVIQERELRAQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK
Ga0209753_10307774F013899N/ALSASINSLFPDTCAIEEGKTGQFELFQSGKSFMSAGHGKFFDLEDVKKKLTESGQDLFTN
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Institute for Fundamental Biomedical Research
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