NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209753_1031493

Scaffold Ga0209753_1031493


Overview

Basic Information
Taxon OID3300027622 Open in IMG/M
Scaffold IDGa0209753_1031493 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1576
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)8.0Long. (o)-156.0Alt. (m)Depth (m)550
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018553Metagenome / Metatranscriptome234Y
F022673Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0209753_10314933F018553AGGMLCIPKLRIAILNEELALWEKRLRDKPDDIPYLGYIRTTLKDRIKELEDQEKELDKQEKN
Ga0209753_10314936F022673GGAGGMKREQIVSPRVEIAEKIHEELLVSLELERKLLKKELTLQETMSERVEVRKDLMNCERKIKELTEQLQKENDRSKATKWNKQP

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