Scaffold Ga0208942

Basic Information
Taxon OID	3300027627 Open in IMG/M
Scaffold ID	Ga0208942_1000382 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027627 Open in IMG/M

Scaffold ID

Ga0208942_1000382 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18275
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (76.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18275

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (76.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.5046	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.5046

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001848	Metagenome / Metatranscriptome	626	Y
F004547	Metagenome	433	Y
F006019	Metagenome / Metatranscriptome	383	Y
F012116	Metagenome	283	Y
F060718	Metagenome / Metatranscriptome	132	N
F090376	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208942_100038224	F012116	GGA	MKPLAYLVEEFDSTGKLVRSMLMASEPREMSWFKDLKSKMHNVTITPLIPDTANIIKVTNVKKYDSSRFVIGL
Ga0208942_100038228	F090376	AGAAG	MTDITLIDGTVVDNYSREYMLYCEAKWLLNKELSYRREWLDKILVKRGNDVPIIKGYMVLLNAKAPAGLP
Ga0208942_100038232	F060718	N/A	MIVLNILNWVGLTILKLLIVALLFSAMGFSLVFMYAMQYLTQALHYVDKNVH
Ga0208942_100038234	F006019	N/A	MTFITENNIANLYSALIEFPVFDEYKLPPASKVDFVIVHDDSMCGQYEPPEKGEPHIITISTARHSYLYPVMMTLAHEIIHMCVYLETPKTDRYTSHKGLFLKLQKRVANHLGFDPKEL
Ga0208942_100038235	F004547	GGA	MKQLLMAITLLLLWVFLYDYAEAKELPKEMSMATEAGEIVLTTKECIFTKQGLQGYEYAAYATDRGHPNHEGCWKSDRYEGKQAVYIYFPEIDQTAVFDAKLFKPKATI
Ga0208942_100038241	F001848	N/A	MILHYIPKDQLREHWDYVKHGLELVRQRGHTQWIIEDVYCDCYENRSMLFVGLVDNKAVGFVVLQPIGDTLHIWATWSTLNDETLFYQAWQEIQAIAKQGGKSRVTFSSQRKGWERKARALGFKPQTWEFIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208942_1000382

Overview

Ecosystem & Geography

Associated Families

Sequences