Basic Information | |
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Taxon OID | 3300027627 Open in IMG/M |
Scaffold ID | Ga0208942_1002483 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6442 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.5046 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004111 | Metagenome / Metatranscriptome | 452 | Y |
F006218 | Metagenome / Metatranscriptome | 378 | Y |
F011150 | Metagenome / Metatranscriptome | 294 | Y |
F013409 | Metagenome / Metatranscriptome | 271 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208942_10024831 | F011150 | N/A | HHKIIENFRHDIIMRKIKQKEDKEFRNMFIKIFLIIVIAILLLAVINNYR |
Ga0208942_100248311 | F006218 | GAG | MGKRKEILKSCGNCHICGKEHMSNEGGWVINAEKLNFCHSLDHSCYDVYFNNVRAAEKQKVVINTENDKRMNMYIEYLKAQKCKHKYQGE |
Ga0208942_10024832 | F013409 | AGG | MIIMMNGTVYNLGFTVDRYDTRTCDKLFDSITYKGKTSGKNKQGVFYKSKEVFAHSCSIEKTTERENERKNKTS |
Ga0208942_10024833 | F004111 | N/A | MKEKIKQVNELCAANGAYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYVIMKCIITKCDPEHIIATGYSKQYRDKPGYLEIAETFAITRALSFMGILLEDITSMEEYKDLEIPVQPMITKGTSSANNRYDEGTINELIKKVHYAPHTAKLDFLWRANRELLDQIKIKDLATYNSILNKFNSKRDEITTQNEV |
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