NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208942_1004604

Scaffold Ga0208942_1004604


Overview

Basic Information
Taxon OID3300027627 Open in IMG/M
Scaffold IDGa0208942_1004604 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4721
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039943Metagenome / Metatranscriptome162Y
F076870Metagenome / Metatranscriptome117N
F096527Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208942_100460413F096527N/ALKNYIMSQTFTEIADDAIIDIKVNKSFYFMVKNLGFTLFKLMSQEESQIFNELMQKKDINLFPDYNTLSQPQQNFYTIMLLLAEIEKEAIKNNLTQSKEVLMPEDEGFKIENIQKEFDIPDPTTQD
Ga0208942_10046042F039943N/AMKEVIKGSILNEHRQEKEYGWKPHKTPKKPKEKRSEYIAAFIGILIGLIMGIIMSIFMYRDVKKSKLLIEENKLLKEMLYYRDINPMETP
Ga0208942_10046047F076870AGAAGMEKTATNDILLTKKFKKFLHSIIEEHYNMTSQNNDTTGLNHSLNYLWYMYHKGVNSGVYRPFIFMAEMHLLKEMGYMENDDIKNLNEMIKSEDTDNFYLGYLSLESLRSKRIKEHGAFSQGSKVYMDLVPDYASKILNTTLFKNALKNEK
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