NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208942_1038463

Scaffold Ga0208942_1038463


Overview

Basic Information
Taxon OID3300027627 Open in IMG/M
Scaffold IDGa0208942_1038463 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1500
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004306Metagenome / Metatranscriptome444Y
F048302Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0208942_10384632F048302N/AMVLITIFGILVLAGVAKLIYDTQQKKKQTPTKNEDGFEFKDDFQKLAGIKPIETTTSELPTNVTTKKLNEQIVEALLKAAENSEFPKPDESINVRTTKITTIDTNFGDNDPLATIPMSRISKEGKKKMAEVAKQDISDRLDAQTKQMLESELGPVIDQLAKEVLAKPKRKYKKKATK
Ga0208942_10384634F004306N/AMSLAQRELGNTFRKDNETNMSNKHIEIIRFDNAKIHIKEYLNGEQLATTLTYQPAILKMTGARLLVINADNKEEYYDCRYDDCTIKRLNG
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