NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209422_1005937

Scaffold Ga0209422_1005937


Overview

Basic Information
Taxon OID3300027629 Open in IMG/M
Scaffold IDGa0209422_1005937 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3004
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0209422_10059372F014888AGGAGMNKVMEVLLTVLALVGLYCAIPANKSRPGNSAVRAGQAVVVADGSDPMPFCRRKVCTQ
Ga0209422_10059374F003832N/AMKSQAKELGTEANWPPEEGQIISFQSSTGQSSTGFETMILKEVRWGLVWRDFILSDGRVIPEHRISGCPHPQVWRKISEVTDNEREECEERLLSMAGAGMDPRKRDQPFWAELNQYLAYTYLRYKQAA
Ga0209422_10059375F005268GAGGVSRSDDETEEQQAWRVLSEAGLVEIRLDEFAEKIGDVKRIVIVRLRELLDFNTGIKERESAAYSLGTLRGLELKVLANPPKPPDSSEM
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