NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208988_1038654

Scaffold Ga0208988_1038654


Overview

Basic Information
Taxon OID3300027633 Open in IMG/M
Scaffold IDGa0208988_1038654 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1226
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033976Metagenome / Metatranscriptome176Y
F043021Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0208988_10386541F043021GAGMQSLLLSQEMLSGDRSPSTPFNVVIMYEDFGTGKQAKKGLDYVAEELGNDLEFRHSMWRLDILQDPKLNVLAAALAEADLLIISLRGKGQLPTKIRALIDERLAQTVNHQCALVALFEGAAPATRSSVYAYLATLARQHGLDFFEQALSDAEDHEGPSLKLLWVF
Ga0208988_10386542F033976AGGAGMSFQEKSASRKKTQGDAPDILHEVSLIGLAANLDDPRYHRAIGKLSIVLEELKSINATRTQQRRGSRALRRYIE
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