NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209905_1006519

Scaffold Ga0209905_1006519


Overview

Basic Information
Taxon OID3300027634 Open in IMG/M
Scaffold IDGa0209905_1006519 Open in IMG/M
Source Dataset NameThawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1415
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost → Thawing Permafrost Microbial Communities From The Arctic, Studying Carbon Transformations

Source Dataset Sampling Location
Location NameSweden: Kiruna
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021603Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0209905_10065191F021603GAGMETRQTIQLALLVFGMSIGVAAQNAQTPAETTPAPAMGQSAPVLNPENPPVTGLDEPGLDLHPASRSFISPALQASESADTNAENDLGTSSVSSVARVIGALDLQQFWPKSDLILEYLGGGAFYSSPSDVKQMEAFGLEAVTRWRTGQVTLRDAFSYLPDGSFELGFGGNPGLGLSLIHI
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