Scaffold Ga0209818_1000589

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209818_1000589

Scaffold Ga0209818_1000589

Overview

Basic Information
Taxon OID	3300027637 Open in IMG/M
Scaffold ID	Ga0209818_1000589 Open in IMG/M
Source Dataset Name	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7849
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	41.7655	Long. (^o)	-111.8143	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001505	Metagenome	681	Y
F033848	Metagenome	176	Y
F053644	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209818_10005894	F053644	AGG	MKGLRLYLDLKRPDPQGGGLIFYSHRAGGPYYRWRYEALRGEWLCSRMHAGDLVVTELVSAPWKEVPAGLRTTLDLHYVE
Ga0209818_10005896	F033848	N/A	MKTLYAMRRANGDWFAVADNGNLRMPIFKSSADAMTAYWRDSGMECFRPVTFDAHSLEELRRTDGQTASFFMITDPSRHLKHGLRLSFTELAPFMVT
Ga0209818_10005899	F001505	GGA	MQETIVETHAQVQKDFDAVRWEEQNLWLTEGQANDRIPMNGSVKDIDGAPSVQRSFARRSHQVMFKKWSQARHD

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