NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209818_1004827

Scaffold Ga0209818_1004827


Overview

Basic Information
Taxon OID3300027637 Open in IMG/M
Scaffold IDGa0209818_1004827 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2607
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006445Metagenome / Metatranscriptome373Y
F065097Metagenome128N
F068110Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209818_10048271F006445N/AMKPITTDDLLDQMSRIYERARVEVLTLLRSHEPAGHSVMPPREWMSATQLAEYWQLYNENDEPTTAGILKWAKRPADKFPLPHAYMGDLLRFNRDEVDQWARQE
Ga0209818_10048272F068110GGGGGMHTTDKNTVLEPRAAMMARLLPIHDDAAGEGTDEGAMIVTFEGYISGIPEFFTNDCHEAFRFKDREQAESFVAEFADALLNPQVLHHP
Ga0209818_10048273F065097AGGAGMPDHPNTDYENESGSLDAEDWEIALKPYAGYPDAALDLARNLMTIRECLKTTPPDVPTAVAALNEAADSLFPLTSFHKGAHGLYRTYIEGRATRAHEALMQSLGVKF
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