Scaffold Ga0209135_1003524

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209135_1003524

Scaffold Ga0209135_1003524

Overview

Basic Information
Taxon OID	3300027642 Open in IMG/M
Scaffold ID	Ga0209135_1003524 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5628
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031374	Metagenome / Metatranscriptome	182	N
F044938	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209135_10035241	F044938	N/A	MSDRILVVTPPDDTLLQGIRIVHVELTEEHSSIVSNALMQATLPHTIINYVWKMGDSVAWLMDKIVKGDLIIFNASPENNGAIELIIGWVAAQPRSYYFGNLKDLHMVNDRAIYS
Ga0209135_10035243	F031374	N/A	MNTSTNAQTINIENPKFYSETNGSLLEQILNVSFGWFKGLDADQKDAYYSSLILALEEVQPGQFSRWYKNNASGTVRVAWQFPRNGTLCKRLHVSVIAHNMQKNLQTTACFNEVDNRWHWFS

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